WARNING: This product is for research use only, not for human or veterinary use.

MedKoo CAT#: 522446

CAS#: 1800205-57-5

Description: CDy9 is a highly selective fluorescent probe for the detection and isolation of mESC using fluorescence microscopy and flow cytometry. CDy9 allows the detection and isolation of intact stem cells with marginal impact on their function and capabilities. CDy9 may be a non-invasive biotechnological tool for the preparation, purification and characterization of mESC. Stem cell research has gathered immense attention in the past decade due to the remarkable ability of stem cells for self-renewal and tissue-specific differentiation. Despite having numerous advancements in stem cell isolation and manipulation techniques, there is a need for highly reliable probes for the specific detection of live stem cells.

Chemical Structure

CAS# 1800205-57-5

Theoretical Analysis

MedKoo Cat#: 522446
Name: CDy9
CAS#: 1800205-57-5
Chemical Formula: C23H23BClF2N3O2
Exact Mass: 457.15399
Molecular Weight: 457.71
Elemental Analysis: C, 60.36; H, 5.07; B, 2.36; Cl, 7.75; F, 8.30; N, 9.18; O, 6.99

Size Price Shipping out time Quantity
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Pricing updated 2021-02-26. Prices are subject to change without notice.

CDy9, is not in stock, may be available through custom synthesis. For cost-effective reason, minimum 1 gram order is requested. The product will be characterized by NMR, HPLC and MS analysis. Purity (HPLC) is usually >98%. CoA, QC data, MSDS will be provided when product is successfully made. The estimated lead time is 2-3 months. Please send email to to inquire quote.

Synonym: CDy9; CDy-9; CDy 9.

IUPAC/Chemical Name: (E)-2-chloro-N-(2-(5,5-difluoro-3-(2-hydroxy-5-methylstyryl)-1-methyl-5H-4l4,5l4-dipyrrolo[1,2-c:2',1'-f][1,3,2]diazaborinin-10-yl)ethyl)acetamide


InChi Code: InChI=1S/C23H23BClF2N3O2/c1-15-5-8-21(31)17(12-15)6-7-18-13-16(2)23-19(9-10-28-22(32)14-25)20-4-3-11-29(20)24(26,27)30(18)23/h3-8,11-13,31H,9-10,14H2,1-2H3,(H,28,32)/b7-6+

SMILES Code: CC1=CC(/C=C/C2=CC(C)=CC=C2O)=[N+]3C1=C(CCNC(CCl)=O)C4=CC=CN4[B-]3(F)F

Solid powder

>98% (or refer to the Certificate of Analysis)

Shipping Condition:
Shipped under ambient temperature as non-hazardous chemical. This product is stable enough for a few weeks during ordinary shipping and time spent in Customs.

Storage Condition:
Dry, dark and at 0 - 4 C for short term (days to weeks) or -20 C for long term (months to years).

Soluble in DMSO, not in water

Shelf Life:
>2 years if stored properly

Drug Formulation:
This drug may be formulated in DMSO

Stock Solution Storage:
0 - 4 C for short term (days to weeks), or -20 C for long term (months).

HS Tariff Code:

Handling Instructions:

Preparing Stock Solutions

The following data is based on the product molecular weight 457.71 Batch specific molecular weights may vary from batch to batch due to the degree of hydration, which will affect the solvent volumes required to prepare stock solutions.

Select a batch to recalculate based on the batch molecular weight:
Concentration / Solvent Volume / Mass 1 mg 5 mg 10 mg
1 mM 1.15 mL 5.76 mL 11.51 mL
5 mM 0.23 mL 1.15 mL 2.3 mL
10 mM 0.12 mL 0.58 mL 1.15 mL
50 mM 0.02 mL 0.12 mL 0.23 mL

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1: Chandran Y, Kang NY, Park SJ, Husen Alamudi S, Kim JY, Sahu S, Su D, Lee J,
Vendrell M, Chang YT. A highly selective fluorescent probe for direct detection
and isolation of mouse embryonic stem cells. Bioorg Med Chem Lett. 2015 Nov
1;25(21):4862-5. doi: 10.1016/j.bmcl.2015.06.037. Epub 2015 Jun 16. PubMed PMID: